Kowalczykowski Lab - UC Davis
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An archaeal Rad54 protein remodels DNA and stimulates DNA strand exchange by RadA.

Haseltine, Cynthia A Kowalczykowski, Stephen C

Published in Nucleic acids research

Rad54 protein is a key member of the RAD52 epistasis group required for homologous recombination in eukaryotes. Rad54 is a duplex DNA translocase that remodels both DNA and protein-DNA complexes, and functions at multiple steps in the recombination process. Here we use biochemical criteria to demonstrate the existence of this important protein in a...

Human Rad51 protein displays enhanced homologous pairing of DNA sequences resembling those at genetically unstable loci....

Seitz, Em Stephen Charles Kowalczykowski

Published in Nucleic Acids Research

DNA strand exchange, the central step of homologous recombination, is considered to occur approximately independently of DNA sequence content. However, certain prokaryotic and eukaryotic genomic loci display either an enhanced or reduced frequency of genetic exchange. Here we show that the Homo sapiens DNA strand exchange protein, HsRad51, shows a ...

Binding of double-stranded DNA by Escherichia coli RecA protein monitored by a fluorescent dye displacement assay.

Zaitsev, En Stephen Charles Kowalczykowski

Published in Nucleic Acids Research

We have developed a new assay to characterize the double-stranded DNA (dsDNA) binding properties of RecA protein. This assay is based on measurement of changes in the fluorescence of a 4 ,6-diamidino-2-phenylindole (DAPI)-dsDNA complex upon RecA protein binding. The binding of RecA protein to a complex of DAPI and dsDNA results in displacement of t...

A helicase assay based on the displacement of fluorescent, nucleic acid-binding ligands.

Eggleston, Ak Rahim, Na Stephen Charles Kowalczykowski

Published in Nucleic Acids Research

We have developed a new helicase assay that overcomes many limitations of other assays used to measure this activity. This continuous, kinetic assay is based on the displacement of fluorescent dyes from dsDNA upon DNA unwinding. These ligands exhibit significant fluorescence enhancement when bound to duplex nucleic acids and serve as the reporter m...

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